Site icon MetaShape

Complete workflow in Agisoft Metashape: from photos to 3D model

You have the photos, you have Metashape installed and running. Now what? This guide takes you step-by-step through the entire workflow: from organizing your images before importing them to exporting your final 3D model in the format you need. It’s the guide we wish we’d had when we started.

Before opening Metashape: photo capture

The processing result can only be as good as the input images. No software can recover information that was not captured.

Key recommendations for capture

Overlap: Each point of the object or terrain must appear in at least three images. As a general rule, aim for 80% frontal and 70% lateral overlap between consecutive photos.

Angle coverage: Don’t just photograph “head-on.” For objects, shoot from all sides from different heights. For terrain with vegetation or structures, combine downward-facing shots (camera pointing straight down) with oblique shots (camera tilted between 15° and 45°).

Lighting: I preferred diffused natural light (cloudy days or shade) over direct light with harsh shadows. Avoid mixing photos taken under different lighting conditions within the same project.

Camera settings: Use the smallest aperture possible (f/8 to f/11) to maximize depth of field. Set the ISO to the minimum to reduce noise. Use a fast enough shutter speed to avoid motion blur (1/500 or faster outdoors).

What to avoid: shiny surfaces, glass, water, and cloudless skies. These elements have no recognizable texture for the algorithm and generate errors in the model.

Step 1: Create a new project and add photos

Open Metashape. Before importing anything, save the project:

File → Save As → choose a folder dedicated to the project and give it a descriptive name (for example: levantamiento_edificio_norte_mayo2026).

Organizational tip: Create a root folder for the project with subfolders: /fotos/procesado/exportaciones. Save the .psxMetashape file in the root.

To add photos:

Workflow → Add photos (or drag images directly to the Workspace panel).

Metashape will display the photos in the Workspace panel under a “Chunk” (processing block). If you have images from different sessions or cameras, you can organize them into separate chunks and then align them.

📷 Photo ideas for this step:

Step 2: Inspect and filter the photos

Before processing, quickly review the imported images. Metashape displays an estimate of the image quality for each photo (viewable in the Photos tab ).

To calculate it manually: Tools → Estimate image quality

Photos with a quality below 0.5 should be discarded from processing. Photos with a quality between 0.5 and 0.7 can be included but will contribute less. Ideally, most should have a quality above 0.8 .

Disable (right click → Disable) blurry, overexposed, underexposed photos or photos that capture moving objects (people, cars, vegetation in strong wind).

📷 Photo ideas for this step:

Step 3: Align photos

This is the first processing step. Metashape detects the characteristic points of each image, establishes correspondences between photos, and calculates the position of each camera in space.

Workflow → Align photos

Recommended parameters

ParameterOptionWhen to use it
PrecisionHighProfessional projects, surveying
PrecisionAverageMedium-sized projects, balance speed/quality
PrecisionLowFor rapid testing only
Key Point Limit40,000Default value, works well in most cases
Limit of joining points4,000Default value
Apply maskAs neededIf you applied masks to the photos

Tip: For large projects (more than 500 photos), start with Medium precision for an initial review. If the result is good, you can reprocess at High.

When finished, you will see the sparse point cloud and the positions of all the cameras represented as small squares in the 3D view. Check that:

If many cameras are not aligned, the problem is usually insufficient overlap or low-quality photos.

📷 Photo ideas for this step:

Step 4: (Professional only) Configure GCP checkpoints

If you need the model to have real georeferenced coordinates, this is the time to load the ground control points (GCPs) .

File → Import → Import reference points → select the CSV file with your GCP coordinates.

Next, for each GCP, open the photos where it’s visible and manually mark it by clicking on it. Metashape requires each GCP to be marked in at least 3 photos to include it in the alignment.

Once all the GCPs are marked, click Update Transformation in the Reference panel to readjust the model with the actual coordinates. The GCP error should be less than 5 cm for standard topographic projects.

If you skip this step, the model will have correct geometry but will be in an arbitrary coordinate system, without scale or real geographical orientation.

📷 Photo ideas for this step:

Step 5: Build the dense point cloud

With the cameras aligned, Metashape can now calculate the depth of each pixel and generate the dense point cloud.

Workflow → Build dense point cloud

Recommended parameters

ParameterOptionDescription
QualityUltra HighUse the original resolution of the photos. Very slow, only suitable for small objects or when maximum detail is needed.
QualityHighIt reduces image sizes by half. A good balance of quality and time for most projects.
QualityAverageReduce to a quarter. For large projects or testing.
Depth filteringGentleFor complex surfaces, vegetation
Depth filteringAggressiveFor smooth, indoor surfaces

This is the longest stage. A project of 300 photos in High quality can take between 1 and 4 hours depending on the hardware. The GPU significantly speeds up this process.

When finished, check the dense point cloud: it should cover the entire area of ​​interest without significant gaps. If there are gaps, they generally indicate areas with little overlap or surfaces without texture.

📷 Photo ideas for this step:

Step 6: Build the 3D mesh

The mesh connects the points of the cloud to generate a continuous surface.

Workflow → Build mesh

Recommended parameters

ParameterRecommendation
Surface typeArbitrary for objects and buildings / Field height for flat terrain
Source dataDense point cloud (for maximum detail)
Face countHigh (for export/archive) / Medium (for online viewing)

Tip: For topographic projects (DEM generation), sometimes you can skip the mesh and go directly to the DEM from the point cloud.

📷 Photo ideas for this step:

Step 7: Build the texture

The texture projects the original photographs onto the mesh to obtain the final photorealistic model.

Workflow → Build texture

Recommended parameters

ParameterRecommendation
Mapping modeGeneric for objects / Adaptive orthophoto for buildings and flat surfaces
Mixing modeMosaic (better overall quality)
Texture size4096×4096 for medium-sized projects / 8192×8192 for maximum detail

📷 Photo ideas for this step:

Step 8: (Professional Only) Generate orthomosaic and DEM

For mapping or surveying projects, the final products are the orthomosaic and the digital elevation model.

Workflow → Build Elevation Model (DEM) Workflow → Build Orthomosaic

An orthomosaic is a geometrically corrected, georeferenced orthophoto, ready for use in GIS. The DEM represents the elevation of each point on the terrain.

Before exporting, check the coordinate system in the Reference panel: it must match the reference system of your GCPs and the one expected by your GIS software (ArcGIS, QGIS, AutoCAD Civil 3D, etc.).

📷 Photo ideas for this step:

Step 9: Export the result

File → Export → choose the format according to your destination:

DestinationRecommended format
3D printingOBJ, STL
CAD/BIM SoftwareOBJ, FBX, DXF
Game engine (Unity, Unreal)FBX, OBJ
GIS software (ArcGIS, QGIS)GeoTIFF (orthomosaic / DEM), LAS/LAZ (point cloud)
Archive / HeritageOBJ + MTL + texture / E57
Web visualization (Sketchfab)OBJ, FBX, PLY
3D PDFPDF (direct export from Metashape)

Tip: Before exporting the mesh, consider reducing the number of polygons using Tools → Mesh → Decimation if the destination is web visualization or real-time display. Models without decimation can have millions of polygons, unnecessary for many uses.

Summary of the complete workflow

Captura de fotos
      ↓
Crear proyecto y agregar fotos
      ↓
Inspeccionar calidad de imágenes
      ↓
Alinear fotos (SfM)
      ↓
[Professional] Cargar y marcar GCPs
      ↓
Construir nube de puntos densa (MVS)
      ↓
Construir malla 3D
      ↓
Construir textura
      ↓
[Professional] Generar DEM / Ortomosaico
      ↓
Exportar al formato deseado

Common mistakes and how to avoid them

Few cameras aligned: insufficient overlap between photos or low image quality. Solution: check coverage during capture and delete low-quality photos before aligning.

Model with gaps: areas photographed from a single angle or surfaces without texture. Solution: add complementary photos of those areas.

Model “floating” in space (not to scale): GCPs were not used and GPS coordinates were not imported. Solution: Use GCPs or enable the use of GPS data from photos (exif) in the Reference panel.

Very slow processing: quality set too high for the available hardware. Solution: Use Medium quality for large projects or upgrade your GPU.

Textures with visible seams: variable lighting between photos. Solution: always photograph with uniform light and use the Mosaic blending mode .

Do you need help with your first project?

At Aufiero Informática , official distributors of Agisoft Metashape in Argentina, we offer technical support in Spanish and guidance for teams starting out with photogrammetry.

👉 View Agisoft Metashape licenses at Aufiero Informática

Frequently Asked Questions

Can I process photos taken with my cell phone?
Yes. Modern mid-range and high-end smartphones produce photos of sufficient quality for many projects. The result won’t be the same as that of a DSLR camera with a quality lens, but for general documentation and creative projects, it’s perfectly acceptable.

Is it necessary to process in the exact order of this workflow?
Yes, the steps are sequential: you can’t build the dense cloud without having aligned the photos first, nor can you build the mesh without the dense cloud. Metashape handles this automatically.

How much disk space do I need?
It depends on the project. As a reference: 300 24MP photos generate approximately 3-5GB of project files in High quality. Exported files are generally smaller.

Can I pause and resume processing?
Yes. Metashape saves the project state in the file .psx. You can close the program and resume from the last completed step.

Exit mobile version